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Bioinformatics Facility

Helpful Information

TOOLS

EMBL tools Tools for database and homology searching, browsing and analysis including FASTA, CLUSTALW, MSA, PSA
Sequence Analysis Server Including SIM, MAP, CAP, and AAT
BCM Search Tools Tools for secondary structure prediction, multiple
Sequence alignment, gene finding and more.
MOTIF Searches Protein Sequence Motifs
PatScan Searches for pattern matches in nucleotide or protein sequences
SCOP Structural Classification of Proteins

DATABASES

DNA  
EMBL Nucleotide Sequence Database
GenBank National Center for Biotechnology Information
   
Protein  
PROSITE database of protein families and domains
Swiss-Prot protein database
TIGR a collection of curated databases containing DNA and protein sequence, gene expression, cellular role, protein family, and taxonomic data for microbes, plants and humans
INTERPRO resource for whole genome analysis
InterPro provides an integrated view of the commonly used signature databases, and has an intuitive interface for text- and sequence-based searches.
Protein data bank repository for the processing and distribution of 3-D biological macromolecular structure data
   
Genomic  
The Human Genome Database international collaboration in support of the Human Genome Project
Human, yeast and worm proteome provides searches based on biochemical functions, cellular and organismal roles and subcellular location.
Flybase a database of the drosophila genome
Saccharomyces Genome database
PlasmodiumDB the plasmodium genome resource
WormBase repository of mapping, sequencing and phenotypic information about the nematode C. elegans and some closely related nematodes
Mouse Genome Informatics Provides integrated access to data on the genetics, genomics and biology of the laboratory mouse.
   
Software  
EMBOSS package of free Open Source software for sequence analysis.
Bioinformatics.org provides free bioinformatics software.
SRS Sequence Retrieval System (network browser for databanks in molecular biology)
Ensembl software system which produces and maintains automatic annotation on eukaryotic genomes.
Bioperl Project provides an online resource for modules, scripts, and web links for developers of Perl-based software for life science research
   

General Information

 
Bioinformatics Resources contains a collection of bioinformatics links to information and services
Bioinformatics links contains bioinformatics links

 

 

 

 

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